PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G252800.1
Common NameB456_001G252800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 190aa    MW: 22087.8 Da    PI: 11.5712
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G252800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.33.9e-0871102236
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 
                          y+GVr ++ +g+++AeIrd + +g   r++l  f
  Gorai.001G252800.1  71 SYRGVRKRP-WGKFAAEIRDSTRRG--SRVWLAAF 102
                         69*******.**********43343..99999766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.18E-1270115No hitNo description
SuperFamilySSF541711.57E-971116IPR016177DNA-binding domain
SMARTSM003808.6E-1571120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-1271104IPR001471AP2/ERF domain
PfamPF008471.7E-471102IPR001471AP2/ERF domain
PROSITE profilePS5103212.53671103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MQIYQRLDRR RRFPAAVSGM SSFSSSISPK KRLGWTYWVM KKKKRVKHRQ SVATTPSMAL  60
RRKRFAQEVK SYRGVRKRPW GKFAAEIRDS TRRGSRVWLA AFSMRGPLAT LNFPIEAVKA  120
SLKELKYRCD EDKGWSPVVD LKNRYSLRKR SKNKKIKPKD AALRKQQNLL VFEDLGADYL  180
EQLSISSCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1470115161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-1470115464ATERF1
3gcc_A6e-1470115464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712DRRRRF
24263KKRVKHRQSVATTPSMALRRKR
3146154LRKRSKNKK
4148154KRSKNKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157212e-49JX615721.1 Gossypium hirsutum clone NBRI_GE59864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448621.16e-72PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC82e-37ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2PWL21e-136A0A0D2PWL2_G
STRINGPOPTR_0002s04020.12e-40(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-33ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]